Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1456
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199...    31   0.66 
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204...    31   0.66 
02_05_1265 - 35326506-35326773,35326944-35327109,35327194-353273...    30   1.5  
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820...    30   2.0  

>12_01_0273 -
           1989058-1989349,1989730-1989837,1990315-1990508,
           1990601-1990717,1990801-1990966,1991323-1991490,
           1991734-1993052
          Length = 787

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 454 KLNSIFFYKRDSLYFIQSSYKSSIKRLMIMLPLY 555
           K  S F++  D  Y I++  K+ +K L+ MLP Y
Sbjct: 527 KSGSFFYFTNDDKYMIKTMKKAEVKVLLRMLPAY 560


>11_01_0272 -
           2042490-2042781,2043146-2043203,2043385-2043401,
           2043572-2043765,2043858-2043974,2044059-2044224,
           2044430-2044597,2044741-2046047
          Length = 772

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 454 KLNSIFFYKRDSLYFIQSSYKSSIKRLMIMLPLY 555
           K  S F++  D  Y I++  K+ +K L+ MLP Y
Sbjct: 523 KSGSFFYFTNDDKYMIKTMKKAEVKVLLRMLPAY 556


>02_05_1265 -
           35326506-35326773,35326944-35327109,35327194-35327351,
           35327779-35327966,35328046-35328156,35328311-35328476,
           35328718-35328885,35329374-35330623
          Length = 824

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 454 KLNSIFFYKRDSLYFIQSSYKSSIKRLMIMLPLY 555
           K  S+FF  +D  + I++  KS ++ L+ MLP Y
Sbjct: 504 KSGSVFFLSQDDRFMIKTLRKSEVQVLLRMLPKY 537


>03_05_0824 +
           27980191-27980243,27980633-27980671,27980974-27982023,
           27983097-27983262,27983439-27983549,27983637-27983688,
           27984691-27984859,27985604-27985883
          Length = 639

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 454 KLNSIFFYKRDSLYFIQSSYKSSIKRLMIMLPLYSQNTAA 573
           K  SIF+  +D  + I++  K+ +K L+ MLP Y  +  A
Sbjct: 412 KSGSIFYLSQDERFVIKTLRKTELKILLKMLPKYYNHVKA 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,601,650
Number of Sequences: 37544
Number of extensions: 162217
Number of successful extensions: 214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)