Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1454
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   4.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   6.5  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   6.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 321 QTFINKFVRGFNSIKSSG 268
           QTF N  + GF  ++ SG
Sbjct: 118 QTFSNLNISGFGGVQESG 135


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 112 FMKTNSIWHGSVYVKKLITIXNVFGLALS 26
           F+K  ++WH      +L  I  VF  A++
Sbjct: 16  FLKALTVWHVENPTYRLYKIFVVFSFAVT 44


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 47  IXDRNEFLHINTTVPD*IRLHEN 115
           + ++  + HI TT  + IR+H +
Sbjct: 130 VNEKQSYFHIATTSNEFIRVHHS 152


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 NCYLVKCDN*VDFNFLLFHLVPNY 400
           N Y++  D  +DF     HL+ +Y
Sbjct: 154 NTYILALDGDIDFQPEALHLLVDY 177


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 NCYLVKCDN*VDFNFLLFHLVPNY 400
           N Y++  D  +DF     HL+ +Y
Sbjct: 468 NTYILALDGDIDFQPEALHLLVDY 491


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 NCYLVKCDN*VDFNFLLFHLVPNY 400
           N Y++  D  +DF     HL+ +Y
Sbjct: 701 NTYILALDGDIDFQPEALHLLVDY 724


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 NCYLVKCDN*VDFNFLLFHLVPNY 400
           N Y++  D  +DF     HL+ +Y
Sbjct: 701 NTYILALDGDIDFQPEALHLLVDY 724


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,266
Number of Sequences: 336
Number of extensions: 1815
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)