Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1454
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_5017| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_26013| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  

>SB_30182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 134 HRETSVCFHEDEFNLAR*CLCEETHYDXKCV 42
           H+   +   E+E N    C CE  H D KC+
Sbjct: 263 HQNLDIPLTEEEVNRLTCCCCECCHSDKKCI 293


>SB_5017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 315 FINKFVRGFNSIKSSGLF*PPIFQLT 238
           FI +F+RGF ++ ++G   PPI +L+
Sbjct: 54  FIVRFLRGFMNVTTNGSIPPPILRLS 79


>SB_26013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 315 FINKFVRGFNSIKSSGLF*PPIFQLT 238
           FI +F+RGF ++ ++G   PPI +L+
Sbjct: 8   FIVRFLRGFMNVTTNGSIPPPILRLS 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,869,271
Number of Sequences: 59808
Number of extensions: 189621
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)