Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1454
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 12  VIFRKDNARPNT 47
           V+F  DNARP+T
Sbjct: 118 VVFHHDNARPHT 129


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  VIFRKDNARPNTFXI 56
           V+F  D+ARP+T+ +
Sbjct: 119 VVFHHDDARPHTYLV 133


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 12  VIFRKDNARPNT 47
           V+F  DNARP+T
Sbjct: 240 VVFHHDNARPHT 251


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 47  IXDRNEFLHINTTVPD*IRLHEN 115
           + ++  + HI TT  + IR+H +
Sbjct: 101 VNEKQSYFHIATTSNEFIRIHHS 123


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 47  IXDRNEFLHINTTVPD*IRLHEN 115
           + ++  + HI TT  + IR+H +
Sbjct: 101 VNEKQSYFHIATTSNEFIRIHHS 123


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 47  IXDRNEFLHINTTVPD*IRLHEN 115
           + ++  + HI TT  + IR+H +
Sbjct: 40  VNEKQSYFHIATTSNEFIRIHHS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,495
Number of Sequences: 438
Number of extensions: 1913
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)