Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1453
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23GD3 Cluster: Nuclear movement protein; n=3; Alveolat...    33   9.5  

>UniRef50_Q23GD3 Cluster: Nuclear movement protein; n=3;
            Alveolata|Rep: Nuclear movement protein - Tetrahymena
            thermophila SB210
          Length = 1380

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 279  NKKKFIVFY*LY----CYFFRSNIKVVKVNFLKYEDFLFHEFNHNSLSDSILEFKF*VSI 446
            N+K FI  + LY     YF + N+K +  NFL+++D+ F         + +L      S+
Sbjct: 991  NQKLFIFDFDLYKNWMVYFPQGNLKAIMENFLRFDDYYFTICKETGGIEGVLH-----SM 1045

Query: 447  FEF-YKKTTYF 476
            F F +++T +F
Sbjct: 1046 FNFLFRRTDFF 1056


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,256,638
Number of Sequences: 1657284
Number of extensions: 9903600
Number of successful extensions: 18733
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18731
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)