Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1453
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.4  

>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 544 RDEVSDLSNFMCGICLESEERCLIENGP 627
           + ++  + NF CG CL+    C+IE  P
Sbjct: 122 KHKIKCVGNFPCGRCLKKGLECVIETPP 149


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 617 SIKQRSSDSKQIPHIKFDRSETSSRLKTSLGMIEKLLTLKNCK*HATKIRC 465
           SI+QR+ D+ + P+ + +++ETS       G  EK   +KN   H+    C
Sbjct: 232 SIEQRNEDAWRCPYCQSNQTETSLHYLCWCGKQEKPEFVKNLVPHSCGDPC 282


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 724  SIFYFCPLNFTCMRNSV 674
            +IFY CP+ +T +RNS+
Sbjct: 1287 TIFYPCPIAYTYVRNSI 1303


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 366 YEDFLFHEFNHNSLSDSILE 425
           +EDF+FHE NH      ILE
Sbjct: 367 HEDFIFHEGNHFRQLKLILE 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,343
Number of Sequences: 5004
Number of extensions: 48004
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)