Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1453
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    26   0.42 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    26   0.42 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   5.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   5.2  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 490 LQFLSVSNFSIIPKDVFNRDEVSDLSNFMC-GICLESEERCLIENGPCT 633
           L F+ V+   +I +D   + +  D+   +  G  L +  +C+++ GPCT
Sbjct: 6   LLFVLVTITCVIAEDYTTKYDDMDIDRILQNGRILTNYIKCMLDEGPCT 54


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 490 LQFLSVSNFSIIPKDVFNRDEVSDLSNFMC-GICLESEERCLIENGPCT 633
           L F+ V+   +I +D   + +  D+   +  G  L +  +C+++ GPCT
Sbjct: 6   LLFVLVTITCVIAEDYTTKYDDMDIDRILQNGRILTNYIKCMLDEGPCT 54


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 589 LESEERCLIENGPCT 633
           L +   CL++ GPCT
Sbjct: 43  LNAYVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 589 LESEERCLIENGPCT 633
           L +   CL++ GPCT
Sbjct: 43  LNAYVNCLLDQGPCT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,085
Number of Sequences: 438
Number of extensions: 3196
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)