Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1451
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   7.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.5  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 722 KIMYLRLCRTHYYFKKCRDS 781
           K +Y R+C T+YY    RDS
Sbjct: 551 KFIYFRICITNYYRCNVRDS 570


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 90   FLNTIRLNLKSMTDMCKVVFPLNH 161
            FL++++L ++S+TD+    F LNH
Sbjct: 1251 FLSSLQLAVESLTDLLISKFKLNH 1274


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 268 NYIEDGRFCQEYIKTSTEHRIEFNF 194
           NY  D   C EY+K   E    F F
Sbjct: 548 NYFVDWSICDEYVKRFKEDHFSFMF 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,039
Number of Sequences: 5004
Number of extensions: 64227
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)