Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1451
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    29   3.2  
02_01_0012 - 80014-80104,80190-80308,80480-80524,80726-80911,810...    29   5.7  
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    28   7.5  

>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 352  NHRRSFQNIFFLHVKFKILSSELNKLTVNYIEDGRFCQE 236
            N R  + N  F H K  +L SE  +L VN++E+  F  E
Sbjct: 1211 NIRVQYTNKIFFHHKNIMLQSESEQLVVNWVENEEFQYE 1249


>02_01_0012 -
           80014-80104,80190-80308,80480-80524,80726-80911,
           81027-81101,81213-81304,81731-81803,81923-82004,
           82096-82217,82249-82440,82682-82804
          Length = 399

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 158 PLLETICLYDVRKVKFDPMFRTGFDVFLAKP 250
           P+++ + L  V  +K +PMFR G DVF  +P
Sbjct: 264 PVIDEVAL--VEHLKANPMFRVGLDVFEDEP 292


>08_02_0094 + 12277756-12278574,12280314-12280418,12280487-12280543,
            12280969-12281041,12281525-12281703,12281788-12281961,
            12282041-12282326,12282433-12282509,12282599-12282668,
            12282751-12282822,12282920-12283155,12283240-12283374,
            12283466-12283761,12284237-12284408,12284510-12284608,
            12284704-12284835,12284950-12285050,12285426-12285615,
            12285723-12285761
          Length = 1103

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 352  NHRRSFQNIFFLHVKFKILSSELNKLTVNYIEDGRF 245
            N R  + N  F H   K+L +E+  + VN+ +  RF
Sbjct: 1059 NIRVQYANQMFFHPNNKMLQTEVENVGVNWFDSARF 1094


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,846
Number of Sequences: 37544
Number of extensions: 306960
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)