Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1451
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_19019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_7132| Best HMM Match : PT (HMM E-Value=2)                           28   7.6  

>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = -2

Query: 364  KIVFNHRRSFQNIFFLHVKFKILSSELNKLTVNYIEDGRFCQEYIKTSTEHRIEFNFSYV 185
            K+V ++    + +  + ++  +LSSE NKL     E   F ++ +KTS + R+E + S +
Sbjct: 1893 KLVTDNATISKELEIMKIRVDVLSSENNKLNSKLSETSTFLKD-VKTS-KTRLESDLSSI 1950

Query: 184  IQTY 173
             Q Y
Sbjct: 1951 FQLY 1954


>SB_19019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 306 LKFCLQXXXXXXXXXLKTVGFAKNTSKPVRNIGSNLTFL-TSYKHIVS-KSGSKEKRLYT 133
           LK  L+          K   FA+     +    + +TFL  S+ H+ + K G  E+RL  
Sbjct: 118 LKLSLESLEEKDLEIRKLATFAQTNKNDINRHKTTITFLPNSFGHLSAIKQG--ERRLLR 175

Query: 132 YQS*ILNLIESCLENV 85
             S    L+E CLE V
Sbjct: 176 VASLNSELLEVCLEEV 191


>SB_7132| Best HMM Match : PT (HMM E-Value=2)
          Length = 204

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 71  NIETQTFSKHDSIKFKIYD*YV*SRFSFEPLLETICLYDVRKVKFDPMFRTGFDVFL 241
           +++ +TF   DS++FK Y  +V   F+F        LY +  +   P F    D FL
Sbjct: 83  HMQKRTFCNFDSLRFKGYRMFVSLVFAFVFPYMNFFLYTIVTMTVKPNFSFDVDFFL 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,471,118
Number of Sequences: 59808
Number of extensions: 415469
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)