Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1451
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-3|AAB52445.1|   79|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF106588-1|AAC78489.2|   79|Caenorhabditis elegans Hypothetical ...    29   3.9  

>U97193-3|AAB52445.1|   79|Caenorhabditis elegans Hypothetical
           protein C06A5.10 protein.
          Length = 79

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -2

Query: 367 SKIVFNHRRS---FQNIF-FLHVKFKILSSELNKLTVNYIEDGRFCQEYIKTSTEHRIEF 200
           S+  FN+R     FQ  F F H+    L   +NKLT+   E    C +Y++T ++ ++  
Sbjct: 12  SRCPFNNRYCGGLFQGFFRFFHI---FLIVPINKLTLQQFEMLNTCAQYVQTGSQ-KLTR 67

Query: 199 NFSYVIQTYR 170
             +YVI   R
Sbjct: 68  EANYVITEVR 77


>AF106588-1|AAC78489.2|   79|Caenorhabditis elegans Hypothetical
           protein Y76G2A.2 protein.
          Length = 79

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -2

Query: 367 SKIVFNHRRS---FQNIF-FLHVKFKILSSELNKLTVNYIEDGRFCQEYIKTSTEHRIEF 200
           S+  FN+R     FQ  F F H+    L   +NKLT+   E    C +Y++T ++ ++  
Sbjct: 12  SRCPFNNRYCGGLFQGFFRFFHI---FLIVPINKLTLQQFEMLNTCAQYVQTGSQ-KLTR 67

Query: 199 NFSYVIQTYR 170
             +YVI   R
Sbjct: 68  EANYVITEVR 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,706
Number of Sequences: 27780
Number of extensions: 342301
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)