Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1450
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.26 
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   2.5  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   3.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.3  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.5  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   7.5  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   9.9  
SPCC1259.05c |cox9||cytochrome c oxidase subunit VIIa|Schizosacc...    25   9.9  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.9  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   9.9  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 86  YDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQILFTC 265
           Y+   P  ++S +   +L S L      LD++ K L+L FP++I + RV   +    F C
Sbjct: 153 YELPDPETKKSKIK--ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRVFFGQLMKHFYC 210

Query: 266 L 268
           L
Sbjct: 211 L 211


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 113 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQILFTC 265
           E ++D   +       + +L  M KE  LK P+I     V   K+  LF C
Sbjct: 146 ELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSVTKSKFDNLFGC 196


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 39  PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 134
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 492 STNVSRRRWSSPPRATCGTLTSAWRQPRRPMRSRKCRSD 608
           S  V + R  +PP +  GT+ S +R    P+ SRK  +D
Sbjct: 349 SYGVCKHRRENPPISILGTVPSGFRDMGVPVISRKLCAD 387


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 77   YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 232
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 113 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 232
           E   + + +W+++  +MQ  D   ++L   F  I N G++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKL 143


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 26  AAVSAAPQYYHGSSHWPYHHYDPFSP 103
           A  +A PQYY     +P  HY P  P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 527 TESNVRDVDVGLETAQKTNEIAKV*KRPRTLSHQRRCGVL 646
           ++S+ RD+D     A++ N++ K+    RTL+HQ    V+
Sbjct: 221 SKSHFRDLD---NIAKRGNQLGKLAMTLRTLAHQHEAAVV 257


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  YHHYDPFSPYVRESMLDTHSLWSNL 151
           + H+DP+S ++  ++ + H  W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316


>SPCC1259.05c |cox9||cytochrome c oxidase subunit
           VIIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 58

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 638 RIVSDVTAYVVASTLSRSHWSSGL-SPSRRQR 546
           RIV+D +  ++  TL   +W  G   P+ RQR
Sbjct: 13  RIVTDFSVTMILGTLGACYWWFGYHKPAARQR 44


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 656 WNRQELRIVSDVTAYVVASTLSRSHWSS 573
           WN+++LRI+  V ++++  T     +SS
Sbjct: 10  WNQRDLRILPIVVSFLINYTCDNKFYSS 37


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 471 AEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRP 581
           A  T  +S+  S   W+ P  +   +  + W+QP  P
Sbjct: 411 AASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAP 447


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 181 DEGAVVEVPQHYKRRTRGRRQVSDIIHLPGYEQK 282
           +E  + ++  HY   T+  R  +D+IH+P  + K
Sbjct: 282 EECEIEDLHFHYAPNTKRPRIYNDMIHIPSADNK 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,622
Number of Sequences: 5004
Number of extensions: 57156
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)