Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1450
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 29 2.6
05_03_0515 + 14930736-14932697 29 2.6
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 29 3.4
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 29 3.4
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 29 3.4
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488... 29 4.5
08_02_1129 - 24513568-24514296,24515380-24515817 29 4.5
06_03_1255 + 28780181-28781172,28782065-28782932 29 4.5
04_04_0347 + 24564589-24565296 29 4.5
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 4.5
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 5.9
03_06_0599 + 34984869-34985319,34986581-34987563 28 5.9
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333... 28 5.9
02_01_0382 - 2772378-2773544 28 7.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 7.8
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 495 TNVSRRRWSSPPRATCGTLTSAWRQPRRPMR 587
+ VS SS PR C LTS +R+P P R
Sbjct: 18 SRVSVSSSSSTPRRRCAALTSRFREPASPRR 48
>05_03_0515 + 14930736-14932697
Length = 653
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 LVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLDNM 181
L +C + V +P + +W YH + YV +S+ ++ S WSN + L +
Sbjct: 310 LEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLSSC 369
Query: 182 MKE 190
+
Sbjct: 370 FSD 372
>08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 289 NVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEAAGFTRKTC 414
NVK + V +N N L++ ++PW V +T+ TC
Sbjct: 925 NVKVQWNVCHALSNLFMNDTLRLPDMPWPVGLVECPYTQVTC 966
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 447 PEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAW 563
PE+SK + E E TST + R W +P R +S W
Sbjct: 230 PENSK--MREGLEWTSTRMGRPFWEAPSRMPLSRSSSGW 266
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 411 VLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRPMRS 590
++++T PLK++ S P+A+P + T VS W +P + L S+W P
Sbjct: 351 LVQLTPPLKKRAFSISSSPLAKPNQIHLT-VSIVSWRTPFKRMRRGLCSSWLAGLNPNEG 409
Query: 591 RKC 599
C
Sbjct: 410 TGC 412
>11_06_0296 +
22046649-22048202,22048524-22048703,22048811-22048860,
22049443-22049564,22051007-22051119,22051227-22051436,
22052152-22052265,22052529-22052658,22053010-22053143,
22053997-22054077,22054181-22054267
Length = 924
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 32 VSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPS 211
++ A +++ G++ W + S +DT SLW +L N +H + ++L S
Sbjct: 376 ITDAVRFFKGNNSWSFLICPLSSRCDGRKFVDTSSLWGHLCN--KHPEGHWRKLQSVLGS 433
Query: 212 IINEGRVEGD 241
++E GD
Sbjct: 434 KLSENTSVGD 443
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 578 SSGLSPSRRQRPARCSRW*TPS 513
+S +SP QR A CSRW PS
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPS 280
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 549 LTSAWRQPRRPMRSRKCRSDHVR--CHIRDDAEFLPIPS 659
+T+ WR P R R + R+D +R HI D + +P PS
Sbjct: 134 ITTGWRPPLRLRRMPRSRADALRRSWHILVDGDDVPPPS 172
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 5 LVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 97
L+ LLAA SAA +H ++ PY HH+ P+
Sbjct: 8 LLASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 207 PAL*TKDAWKATSIRYYSPAWLRTERHQRESEKWSADGAG 326
PA + AW A + W E ++ ++ W +DG G
Sbjct: 1788 PASPSDSAWNAAPVSQGDDVWNSAEANESRNKDWKSDGWG 1827
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 513 RWSSPPRATCGTLTSAWRQPRRPMR 587
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 516 WSSPPRATCGTLTSAWRQPRRPM-RSRKCRSDHVRC 620
WSSPP W+ PR+ R R R H C
Sbjct: 331 WSSPPPPPAAAEAPEWKAPRQAKPRRRAMRCPHCGC 366
>01_05_0027 -
17331888-17331968,17332236-17332806,17333190-17333335,
17333412-17333459
Length = 281
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 426 FPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRP 581
F +K PE + ++ P ++ S+RR PP ++C A +QPR P
Sbjct: 8 FNCSKKWPEGAVTFISNPPLLGTS--SKRRVDDPPSSSCSFKHVASKQPRTP 57
>02_01_0382 - 2772378-2773544
Length = 388
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 429 PLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGT 548
P + + K P + P+ S+N SRR PPRA+ T
Sbjct: 17 PSRLPRSASGKAPTSPPS---SSNASRRHHQQPPRASAST 53
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 107 VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVE 235
+++++L+ LA+E+Q D+++ EL K S + R+E
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIE 1340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,436,956
Number of Sequences: 37544
Number of extensions: 415702
Number of successful extensions: 1411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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