Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1450
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             31   0.84 
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            31   0.84 
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       30   2.0  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 29   2.6  
SB_36851| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)                   29   3.4  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   4.5  
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    28   6.0  
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)                      28   6.0  
SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)         28   6.0  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 432 LKQKQPEDSKRPVAEPTETTSTNVSRRRWSSP 527
           ++Q Q + SKRP   P ETTS N+ ++   +P
Sbjct: 182 IEQSQADRSKRPYDPPVETTSNNMRKKGKPNP 213


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 432 LKQKQPEDSKRPVAEPTETTSTNVSRRRWSSP 527
           ++Q Q + SKRP   P ETTS N+ ++   +P
Sbjct: 170 IEQSQADRSKRPYDPPVETTSNNMRKKGKPNP 201


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 405 KDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPR 533
           K   K   P ++++ E+ +RP  +PT+   T + RR    P +
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTK 469



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 402 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPR 533
           E+   K T PL  + +PE+ +R    PT+   T + RR    P +
Sbjct: 343 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTIKRRPTERPTK 387


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 420 ITFPLKQKQPEDSKRPVAEPTETTSTNVS--RRRWSSPPRATCGTLTSAWRQPRRPMRS 590
           +T P    Q E   R V  P+ +T T +S  RR W +P +    +   +W Q  +P  S
Sbjct: 444 LTRPSSAAQRET--RTVGSPSPSTKTEISDSRRAWPAPAQYYADSRCVSWTQDSKPPSS 500


>SB_36851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 453 DSKRPVAEPTETTSTNVSRRRWSSPPRA 536
           DSKRP ++P +T+  N + +   +PP +
Sbjct: 20  DSKRPASKPVDTSHPNTTHKTSQNPPES 47


>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
          Length = 566

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
 Frame = +2

Query: 62  SSHWP---YHHYDPFSPYVRESML----DTHSLWSNLANEM-QHLDN---MMKELSLKFP 208
           S  WP   YHH +  S Y  +S L    ++++L S  A E+  HL         L +KFP
Sbjct: 173 SHDWPQGVYHHGNVQSLYRYKSFLKPEIESNTLGSAPAGELLTHLQPSYWFSAHLHVKFP 232

Query: 209 SIINEGRVEGDKYQILFTCL 268
           +II  G  +  K+  L  CL
Sbjct: 233 AIIPHGGDKNTKFLALDKCL 252


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRAT 539
           E+   ++  P      E+ +R     T    TN  RRR SSPP A+
Sbjct: 373 EETQKRVDAPRDPSPMEEERRQSQRATSKQRTNPDRRRKSSPPSAS 418



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 450 EDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRPMRSRK 596
           E + +P    +ET S+  S +R SSP  A+ G   S   +PRR    R+
Sbjct: 176 ERANKPKTRRSETRSSRQSNQRSSSPGDASPGRGGSREPKPRRNREGRQ 224


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 393 SCFGIHIPGKVLYFQVMIKSTVSLHHQHSIFR 298
           SCF   IP   L  ++ + +T++ HH  S+ R
Sbjct: 263 SCFSCEIPQNSLRSELPVNTTLTTHHPSSLHR 294


>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1243

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +3

Query: 375 CEFRSSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLT 554
           CE  +  +   D  +I  P +  Q +++  P  + T    T    R W+  P   C    
Sbjct: 456 CELDNLNILIMDYNEIRHPPQADQAKEATCPGCQKTFKLFTE-GTRGWNKKPHQLCIDCH 514

Query: 555 SAWRQPRRPMRSRKCRS 605
              R+ RRP R  + RS
Sbjct: 515 RVNRRSRRPQRQPQQRS 531


>SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)
          Length = 294

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 432 LKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSA 560
           L++K+PED  +   EP +  ST V      S P A   T T A
Sbjct: 138 LEKKKPEDFNKENKEPADKLSTPVKTEAIPSEPLANLHTNTIA 180


>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 206 PSIINEGRVEGDKYQILFTCLVT 274
           P  + EGR E  +Y +LFTCL +
Sbjct: 736 PFYVKEGRKELKRYGVLFTCLAS 758


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 107  VRESMLDTHSLWSNLANEMQHLDNMMKELSL 199
            + ES L+TH +  NLA E+  LDN   E++L
Sbjct: 4396 IAESQLETHDVL-NLAYEITELDNSPPEIAL 4425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,851,550
Number of Sequences: 59808
Number of extensions: 448796
Number of successful extensions: 1583
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)