Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1450
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical pr... 33 0.18
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 0.99
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.99
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.99
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.3
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical... 28 5.3
Z72517-5|CAA96693.1| 545|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 28 6.9
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL132876-21|CAD21671.1| 418|Caenorhabditis elegans Hypothetical... 27 9.2
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ... 27 9.2
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical
protein ZC116.1 protein.
Length = 178
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 5 LVLCGLLAAVSAAPQYYHGSSHWPYHHYDP 94
L LC LLA SA YY S + PY++Y P
Sbjct: 5 LALCSLLAVASAQYLYYPTSYYTPYYYYYP 34
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPP 530
+ DV KI PL+Q Q + VA P+E T +V + S P
Sbjct: 3374 QADVPKIAAPLEQSQIQQEVPTVAAPSEPTQADVPKEAAPSEP 3416
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPP 530
+ DV K+ PL+Q Q + VA P+E T +V + S P
Sbjct: 3448 QADVPKVAAPLEQSQIQQEVPTVAAPSEPTQADVPKEAAPSEP 3490
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPP 530
+ DV KI PL+Q Q + VA P+E T +V + S P
Sbjct: 3374 QADVPKIAAPLEQSQIQQEVPTVAAPSEPTQADVPKEAAPSEP 3416
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPP 530
+ DV K+ PL+Q Q + VA P+E T +V + S P
Sbjct: 3448 QADVPKVAAPLEQSQIQQEVPTVAAPSEPTQADVPKEAAPSEP 3490
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPP 530
+ DV KI PL+Q Q + VA P+E T +V + S P
Sbjct: 3374 QADVPKIAAPLEQSQIQQEVPTVAAPSEPTQADVPKEAAPSEP 3416
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 402 EKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPP 530
+ DV K+ PL+Q Q + VA P+E T +V + S P
Sbjct: 3448 QADVPKVAAPLEQSQIQQEVPTVAAPSEPTQADVPKEAAPSEP 3490
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 435 KQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRPMRSRKCRS 605
K+K PE ++ A PT+ T V + SP T + A + + P + K S
Sbjct: 1382 KEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKSPS 1438
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 435 KQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRPMRSRKCRS 605
K+K PE ++ A PT+ T V + SP T + A + + P + K S
Sbjct: 1382 KEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKSPS 1438
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 435 KQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRPMRSRKCRS 605
K+K PE ++ A PT+ T V + SP T + A + + P + K S
Sbjct: 1382 KEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKSPS 1438
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 435 KQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQPRRPMRSRKCRS 605
K+K PE ++ A PT+ T V + SP T + A + + P + K S
Sbjct: 1382 KEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKSPS 1438
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 432 LKQKQPEDSKRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSAWRQP 572
LK+K+P S +PV++P+ T V + P T W+ P
Sbjct: 239 LKKKEPSTSVKPVSDPSPTKKVPVKKE--PEVPPTPIKNPTKKWKPP 283
>AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical
protein B0511.14b protein.
Length = 470
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 420 FSTRLSRKPSCFGIHIPGKVLYFQVMIKSTVSLHHQHSIFRFHVDVFLFVTRQVN 256
F+ L +K FG+ K+ + + IK + H +FR + FL + N
Sbjct: 408 FAGNLMKKVHFFGLKYLQKLTFMSLEIKKKTKFYQSHLLFRCCIREFLTIESSKN 462
>Z72517-5|CAA96693.1| 545|Caenorhabditis elegans Hypothetical
protein T28F4.2 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 496 VEVVSVGSATGLLLSSGCFCFSGKVI 419
+ V+SV TGL+L G FC +G I
Sbjct: 463 LSVISVVEMTGLMLVMGAFCVTGGAI 488
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 169 LGQHDEGAVVEVPQHYKRRTRGRRQVSDIIH--LPGYEQKDINVKAKNGV 312
+ +H EG++ ++P+H R+ G +D+IH L G +K N +K+GV
Sbjct: 1429 IARHLEGSIADLPKH--RKAAGIMLANDLIHEDLKG-NKKICNHFSKSGV 1475
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +3
Query: 258 SPAWLRTERHQRESEKWSADGAG*QCF*SLLENTEPSLGCEFRSSWVYEKDVLKITFPLK 437
+PA R+E + E E WS G+ + +T + R +W + ++ T +
Sbjct: 204 NPAATRSESDEEEEEGWSKVGS------TSRTSTNAAPQSSERPAWARSESWIQRTQQQQ 257
Query: 438 QKQPEDSKRPVAEPTETTSTN 500
Q+Q + S + A+P T N
Sbjct: 258 QQQQQQSTQQQAQPPITLWNN 278
>AL132876-21|CAD21671.1| 418|Caenorhabditis elegans Hypothetical
protein Y105E8A.25 protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 23 LAAVSAAPQYYHGSSHWPYHHYDPFSPYV 109
L A+S ++ S H PY+HY P S V
Sbjct: 181 LPAISEESEHEQQSIHIPYNHYPPHSSSV 209
>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
protein Y39G8C.1 protein.
Length = 1195
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = +2
Query: 50 YYHGSSHWPY---HHYDPFSPYVR 112
YYHG W + HHY PF VR
Sbjct: 532 YYHGCVSWSWFYPHHYAPFISDVR 555
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 453 DSKRPVAEPTETTSTNVS-RRRWSSPPRATCGTLTSAWRQPRRPMRSRKCRSDHVRCHIR 629
+ K + E +TSTNV RR +SPP A + R P +SR R D R H R
Sbjct: 1239 EPKEELDEDEPSTSTNVPVLRRVNSPP-AQSTSYARRNDGKRHPSKSRSSRDD--RDHRR 1295
Query: 630 D 632
D
Sbjct: 1296 D 1296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,227
Number of Sequences: 27780
Number of extensions: 327148
Number of successful extensions: 1042
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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