Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1450
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          30   0.023
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.66 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 432 LKQKQPEDS--KRPVAEPTETTSTNVSRRRWSSPPRATCGTLTSA 560
           LK++   D   KRP+    +    N+ R+RW S PR    T + A
Sbjct: 15  LKKRNENDPFLKRPITGDEKWVVNNIKRKRWWSRPREPAQTTSKA 59


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 447 PEDSKRPVAEPTETTSTNVSRR 512
           P  +  P  EP+ TTST +S++
Sbjct: 380 PTTTASPTTEPSTTTSTTISQK 401


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 142 VQPCQRNATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIIH 261
           +  C   ++L   DE  VVE+      ++ G R++ +I+H
Sbjct: 423 ISDCSTTSSLSG-DESDVVELQPVKSSKSSGWRKLRNIVH 461


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 207 PAL*TKDAWKATSIRYYSPAWLRTERHQRES 299
           PA   K + +  S RYYS   L   R  RES
Sbjct: 419 PAFRCKPSQRFASGRYYSAYSLHHVRSSRES 449


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 641  LRIVSDVTAYVVASTLSRSHWSSGLSPSRRQRPARCSR 528
            L ++    A VVA  +    W S     R QRP + S+
Sbjct: 1615 LPLIVATVALVVAVVIVALRWRSRYLGDRMQRPMKESQ 1652


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 641  LRIVSDVTAYVVASTLSRSHWSSGLSPSRRQRPARCSR 528
            L ++    A VVA  +    W S     R QRP + S+
Sbjct: 1611 LPLIVATVALVVAVVIVALRWRSRYLGDRMQRPMKESQ 1648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,931
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)