Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1445
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2JIR6 Cluster: ABC transporter, permease protein; n=10...    33   6.1  
UniRef50_A7NKJ7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_A5Z6G2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_Q5CL02 Cluster: B1045D11.20; n=2; Cryptosporidium|Rep: ...    33   8.0  
UniRef50_Q98QQ1 Cluster: Formamidopyrimidine-DNA glycosylase (EC...    33   8.0  

>UniRef50_Q2JIR6 Cluster: ABC transporter, permease protein; n=10;
           Bacteria|Rep: ABC transporter, permease protein -
           Synechococcus sp. (strain JA-2-3B'a(2-13))
           (Cyanobacteria bacteriumYellowstone B-Prime)
          Length = 265

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 397 IVWLLIKSFAVAIRPCWLSSMLPAL*NKLIDHRNFDHNIV-LLSMNVVS*WQ---YRRDR 564
           I+WL   +FA  +   W+ +  P L N  +   + DHN++ L  +   + WQ   Y R  
Sbjct: 115 IIWLRNNTFAAMVVCAWIVAFFPILSNTTLGLNSVDHNLLNLFQLYKANRWQTLIYLRLP 174

Query: 565 KIFPY 579
              PY
Sbjct: 175 SAMPY 179


>UniRef50_A7NKJ7 Cluster: Putative uncharacterized protein; n=1;
           Roseiflexus castenholzii DSM 13941|Rep: Putative
           uncharacterized protein - Roseiflexus castenholzii DSM
           13941
          Length = 156

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 639 IIYIFVYFKTLPSHPRQSGIPYTI-LRSILRNRLGTNNYDFFCVNKIY 779
           ++ +  YF T+  H  + G  YTI +   L N  G  N  F+C N I+
Sbjct: 27  VVAVVAYFTTMTLHHHKDGSIYTINVWDALFNTFGNPNNIFYCFNPIF 74


>UniRef50_A5Z6G2 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 310

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 399 DIARTLILSMSLYFLAVLPTLRKFTHITM*LQFHSICTNLSCI 271
           +I   +IL + +   +V+P+L  F  IT  +Q H++CT +S I
Sbjct: 36  NITNYVILGIKICLYSVIPSLLPFMLITNYMQAHNLCTTVSAI 78


>UniRef50_Q5CL02 Cluster: B1045D11.20; n=2; Cryptosporidium|Rep:
           B1045D11.20 - Cryptosporidium hominis
          Length = 266

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 26/68 (38%), Positives = 30/68 (44%)
 Frame = -3

Query: 297 SICTNLSCIQLTFCMNHTPHICMFRERKKISIHVLRQCVLYHNSRFETADYSXPIFYFSN 118
           S   N   IQLTFC    P         +  I + RQCVLY+   FE  +    IF  SN
Sbjct: 147 SSTNNTETIQLTFC-EQIPK--KENNTLESQIKIKRQCVLYNGKAFEIQN----IFGLSN 199

Query: 117 DSSLQYKN 94
            SS   KN
Sbjct: 200 KSSKASKN 207


>UniRef50_Q98QQ1 Cluster: Formamidopyrimidine-DNA glycosylase (EC
           3.2.2.23) (Fapy-DNA glycosylase) (DNA-(apurinic or
           apyrimidinic site) lyase mutM); n=3; Mycoplasma|Rep:
           Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)
           (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) - Mycoplasma pulmonis
          Length = 278

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 240 HICMFRERKKISIHVLR---QCVLYHNSRFETADYSXPIFYFSNDSSLQYKNIRXYLTLY 70
           +I  F    KI +  LR   +   Y     ET  +   IFYF N S L Y+  R + T +
Sbjct: 60  NIIYFLTNNKIMLSHLRMEGKYSFYEQKPKETLKHIQAIFYFENGSELHYRESRPFGTFH 119

Query: 69  IHKLSS 52
           I  L++
Sbjct: 120 IRYLNN 125


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,205,292
Number of Sequences: 1657284
Number of extensions: 14467917
Number of successful extensions: 33749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33737
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)