Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1445
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    32   0.11 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.3  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   3.0  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   4.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   4.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.3  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   7.0  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.2  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   9.2  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 24/94 (25%), Positives = 40/94 (42%)
 Frame = +2

Query: 188  CLKTCMLIFFLSRNIQMCGV*FMQNVS*IQERLVQIEWNCSYIVMWVNFRNVGNTAKKYN 367
            CL + M  +      +MC    +   S + + +V ++    Y V+     N  N+ +K  
Sbjct: 935  CLTSRMFSYIYVSTERMCQDVVISTTSILHKTIVNLDTIKGYSVLSFFRENHKNSLRKSW 994

Query: 368  DIDKINVRAISFGF*LNHSLLQFVRVGCRQCCQL 469
            +  K      S GF +N+SLL FVR     C  +
Sbjct: 995  EAFKRRAFWTSLGFAINNSLLYFVRALLFYCSSI 1028


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 561 VTSILPLRNNIHRQQYNIMVKVSMVD 484
           VTS  PL NNI R   N+ +K+S V+
Sbjct: 692 VTSCGPLLNNIRRLTVNLEMKISFVN 717


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 689 LPWMAR*SFKIDKNIYYYVATPQHYK 612
           L W+ R ++  ++NIY Y+  P+  K
Sbjct: 454 LAWLCRRNWVYEQNIYMYILVPEEIK 479


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 193 QNVYAYFFSFSKHTDVW 243
           Q++Y   F FSK TDVW
Sbjct: 129 QDLYGAQFQFSKRTDVW 145


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 545  HYETTFIDNNTILWSKFLWSISLFYKAGN 459
            HY +   D NTI+++ F+W + LF +  N
Sbjct: 1041 HYPSNTADMNTIVFNTFVW-LQLFNEINN 1068


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 576 REYFAVTSILPLRNNIHRQQYNI 508
           ++YF    I PL N +H QQY I
Sbjct: 322 KDYFLDNCITPLYNLMHDQQYEI 344


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 300 HSICTNLS--CIQLTFCMNHTPHICMFRERKKISIHVLRQCVLYHNSRFETAD 148
           +SI T L     +L   +   P +   RE  K+  H + Q V+   S+F T+D
Sbjct: 330 NSIVTQLKKKSTELNVDLLSLPSVKSLREEHKVLYHTVSQSVVQQFSKFLTSD 382


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 YIVMWVNFRNVGNTAKKYNDIDKI 382
           +++ WVNF ++  T + YN+I  I
Sbjct: 216 FLIKWVNFSHLHCTWEPYNNISMI 239


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 602 DLHTLHRSYGNILRSRRYCHYETTFIDN 519
           D++ +    G+  RSR  CHYE  F+D+
Sbjct: 826 DIYCVDPETGHSYRSREECHYE--FVDD 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,369
Number of Sequences: 5004
Number of extensions: 67731
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)