Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1445
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228           28   7.2  
06_03_0098 - 16621473-16621511,16621617-16621655,16621741-166220...    28   9.6  

>10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228
          Length = 434

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 646 YIIMSPHHSIIRVFKIYTHYIGRTGIFCGHVDIA 545
           Y+   PHH +     + + Y G T + C H+D+A
Sbjct: 15  YVAACPHHGMEEWVILQSCYNGLTPMSCDHLDVA 48


>06_03_0098 -
           16621473-16621511,16621617-16621655,16621741-16622029,
           16622112-16622282,16622361-16623244,16623332-16623775,
           16623854-16624561
          Length = 857

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -1

Query: 548 CHYETTFIDNNTILWSKFLWSI----SLFYKAGNIDDNQHGRIATANDLIKSQTILHVH* 381
           CHY  + ID NT  W+    +I    + + + G +   +H  +    D    Q I     
Sbjct: 751 CHYLNSRIDKNTYDWTPIQLAIDEAWAQYMQRGGLRKTRHDTLIHKKDFPVKQQIGDQCG 810

Query: 380 FYQCH 366
           F+ CH
Sbjct: 811 FHVCH 815


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,033
Number of Sequences: 37544
Number of extensions: 369532
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)