Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1445
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)                    30   2.4  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  28   7.4  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
          Length = 391

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 186 IASKRVCLFFFFLETYRCVVYDSCRMLVEY 275
           +A  R C+FFF+LE     V+ SCR + E+
Sbjct: 78  MAIVRNCVFFFYLELRIFQVFPSCRKIQEF 107


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 413 IKSQTILHVH*FYQCHYTFWQCCQHCENL 327
           IK    +  H F   HYT    C HC NL
Sbjct: 231 IKGSKKIKGHHFVSTHYTSTTFCNHCSNL 259


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 374 QCHYTFWQCCQHCENLP-TLQCNC 306
           +C   F QC Q+C+N+P +  C C
Sbjct: 629 ECAAGFHQCNQNCQNIPGSYNCTC 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,945,389
Number of Sequences: 59808
Number of extensions: 498881
Number of successful extensions: 1115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)