Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1445
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    29   0.037
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.60 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -3

Query: 351 VLPTLRKFTHITM*LQFHSICTNLSCIQLTFCMNHTPHICMFRERKKISIHVLRQCVLY- 175
           V+P L KF   TM L   SIC  +  + + F    T H+ M    +++ IHVL + ++  
Sbjct: 299 VVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQT-HV-MAPWVRRVFIHVLPRLLVMR 356

Query: 174 -HNSRFETADY 145
            +N+  + +DY
Sbjct: 357 RYNTPSKRSDY 367


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 172 VI*NTLPQNVYAYFFSFSK-HTDVWCMIHAE 261
           +I N LP +V AYF S ++ H D++   +AE
Sbjct: 756 LIYNILPPHVAAYFLSRARHHDDLYSQSYAE 786


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 505 HNIVLLSMNVVS*WQYRRDRKIFP 576
           HN   ++   ++ W  RR R +FP
Sbjct: 430 HNFTTMTPQEIAQWIDRRSRIVFP 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,359
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)