Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1445
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61610.1 68414.m06942 S-locus lectin protein kinase family pr...    31   1.1  
At1g79915.1 68414.m09337 hypothetical protein                          29   3.5  
At4g18820.1 68417.m02778 expressed protein                             29   4.6  
At5g03620.1 68418.m00321 subtilase family protein contains simil...    28   8.0  
At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel...    28   8.0  

>At1g61610.1 68414.m06942 S-locus lectin protein kinase family
           protein similar to KI domain interacting kinase 1 [Zea
           mays] gi|2735017|gb|AAB93834; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 842

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 336 RKFTHITM*LQFHSICTNLSC-IQLTFCMNHT 244
           R  T +T  L FH +C+N+SC    +F  NHT
Sbjct: 6   RNLTLVTTLLIFHQLCSNVSCSTSNSFTRNHT 37


>At1g79915.1 68414.m09337 hypothetical protein
          Length = 164

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = -1

Query: 596 HTLHRSYGNILRSRR--YCHYETTFIDNNTILWSKFLWSISLFYKAGNIDDNQHGRIATA 423
           HT H  Y  +L SR   YCHY   +   +   WS  L  I L   A  I    HG     
Sbjct: 26  HTNHVCYLILLASRPIVYCHYSAFYHIKSPSCWSAGLLGILLARVAKAIFLTDHGDEILG 85

Query: 422 N---DLIKSQTILHVH 384
           N   +L  + ++ H H
Sbjct: 86  NCGKNLELNSSLFHPH 101


>At4g18820.1 68417.m02778 expressed protein
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 579 VREYFAVTSILPLRNNIHRQQYNIMVKVSMVD*LILQSWQH*RQPT 442
           +R +  +T+ + L+NN+H+Q   +  +  M D ++LQ  +  R P+
Sbjct: 34  LRNHIHLTNCIHLKNNMHKQSPVLTDRALMRDLIVLQRSRSLRDPS 79


>At5g03620.1 68418.m00321 subtilase family protein contains
           similarity to subtilisin-type serine endopeptidase XSP1
           GI:6708179 from [Arabidopsis thaliana]
          Length = 766

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 106 Q*RVIREIKDRXRIVSCLEPTVVI*NTLPQNVYAYFFSFSKHTD 237
           Q  V+R +K    IV  LEPT +  +TL    Y +F   +K T+
Sbjct: 419 QDHVVRSLKGAGVIVQLLEPTDMATSTLIAGSYVFFEDGTKITE 462


>At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel,
           putative (CNGC13) similar to CaM-regulated potassium ion
           channel (ACBK1) GI:8515883 from [Arabidopsis thaliana]
          Length = 696

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -1

Query: 548 CHYETTFIDNNTILWSKFLWSISLFYKAGNIDDNQHGRIATANDLIKSQTILHVH*FYQC 369
           C++   + D N+ + + FL +   F    +I ++         D +KS  +     + + 
Sbjct: 284 CNFRFLYCDGNSSVRNDFLTTSCPFINPDDITNSTVFNFGIFTDALKSGIVESDDFWKKF 343

Query: 368 HYTFWQCCQHCENLPTLQCNCNSIRFV--LIFLV 273
            Y FW       NL  L  N N+ +FV  +IF V
Sbjct: 344 FYCFW---WGLRNLSALGQNLNTSKFVGEIIFAV 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,121
Number of Sequences: 28952
Number of extensions: 325320
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)