Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1441
         (363 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D8A0D0 Cluster: hypothetical protein e1116g03.tm...    32   2.7  
UniRef50_A0GEG1 Cluster: Type II secretion system protein; n=4; ...    31   4.8  
UniRef50_Q6CW51 Cluster: Kluyveromyces lactis strain NRRL Y-1140...    31   4.8  
UniRef50_A4F3L5 Cluster: Putative uncharacterized protein ORF9; ...    31   6.3  
UniRef50_A0CL92 Cluster: Chromosome undetermined scaffold_20, wh...    31   6.3  

>UniRef50_UPI0000D8A0D0 Cluster: hypothetical protein
           e1116g03.tmp0186; n=1; Eimeria tenella|Rep: hypothetical
           protein e1116g03.tmp0186 - Eimeria tenella
          Length = 729

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 183 KT*SVVMCDNLTFKFFSLPFWSTI*QAKSKNGRHTNKFKSEVITHNNRSSLFCTGNVNEY 4
           +T S   C N+ ++F S P W    Q ++   RH  + +S++      + +    NVN +
Sbjct: 229 RTQSSAACGNVNYRFISRPMWKITQQQRAHQKRHLQQQRSKICPGWVETRIPLVTNVNSH 288


>UniRef50_A0GEG1 Cluster: Type II secretion system protein; n=4;
           Burkholderiaceae|Rep: Type II secretion system protein -
           Burkholderia phytofirmans PsJN
          Length = 293

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -2

Query: 179 LDRLLCVITSLLNFFLFHFGQQFNKLSPKMVDIQTNLKVRLSHITTDQVFSALGMLMNI 3
           L + L V+  L+NF + HFG +F++   +  D+Q  L   L+ +     F AL ++ ++
Sbjct: 42  LPKSLRVLWPLVNFVVHHFGGKFSRKLVEKTDLQLRL-TSLTFLMNAHQFIALSIIASV 99


>UniRef50_Q6CW51 Cluster: Kluyveromyces lactis strain NRRL Y-1140
           chromosome B of strain NRRL Y- 1140 of Kluyveromyces
           lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
           lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
           1140 of Kluyveromyces lactis - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 297

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 16/41 (39%), Positives = 29/41 (70%)
 Frame = +2

Query: 5   YSLTFPVQKRLDRLLCVITSLLNLFVCLPFLDLAC*IVDQN 127
           ++L + + KR+ R+L +ITS +++F+ L FL + C  VDQ+
Sbjct: 5   FTLFYKLGKRIPRVLVLITSFISVFL-LVFLLVGCYNVDQS 44


>UniRef50_A4F3L5 Cluster: Putative uncharacterized protein ORF9;
           n=1; Planktothrix agardhii NIVA-CYA 126|Rep: Putative
           uncharacterized protein ORF9 - Planktothrix agardhii
           NIVA-CYA 126
          Length = 267

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -2

Query: 203 LTFPVQKRLDRLLCVITSLLNFFLFHFGQQFNKLSPKMVDIQTNLKVRLSHI 48
           + + + + +  +L + T L N    +  QQ NK+S + ++++ N    L+H+
Sbjct: 188 ILWSISQTISIILIIYTILGNILSTYITQQLNKISKQQLEMEANYNYALTHV 239


>UniRef50_A0CL92 Cluster: Chromosome undetermined scaffold_20, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_20,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 473

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 56  ITSLLNLFVCLPFLDLAC*IVDQNGREKNLKVRLSHITTDQ 178
           + S+LNL+    F D+   +++QN +E  L  R+ HIT D+
Sbjct: 375 LVSILNLYYIRAFQDMP--LINQNIQEDQLYTRMIHITPDE 413


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,708,012
Number of Sequences: 1657284
Number of extensions: 5594582
Number of successful extensions: 11045
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11043
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)