Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1441
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   1.6  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    24   8.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    24   8.3  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 29   KRLDRLLCVITSLLNLFVCLPFLDLAC*IVDQNGREKNLKVRLSHITTDQV 181
            K L+R   +  SL  L + L   D A  ++  NG  K  +  L+H+T+ +V
Sbjct: 852  KILNRSFSLTRSLKGLALSLAGSDRASELLSLNGENKPAESNLNHLTSAKV 902


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 147 FKFFSLPFWSTI*QAKSKNGRHTNKFKSEVITHNNRSSL 31
           + ++S+  W +    ++K+ R+TN+    V++  N  SL
Sbjct: 22  YSWYSVKRWQSQLTFRNKSKRNTNRIMLSVVSSLNPDSL 60


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 188 QKRLDRLLCVITSLLNFFLFHFGQQFNKLS 99
           Q  L R  C+I     FFLF F   FN L+
Sbjct: 281 QHFLARFFCLIFFPFLFFLFWFYMHFNILT 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,542
Number of Sequences: 5004
Number of extensions: 27144
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)