Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1441
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906...    28   2.6  
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898...    27   4.5  

>02_02_0335 +
           9063749-9064216,9064846-9064890,9065351-9065470,
           9066025-9067527
          Length = 711

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 105 AKSKNGRHTNKFKSEVITHNNRSSLFCTGNVN 10
           +K+  G H +    E + H +R+SLFC G  +
Sbjct: 612 SKNNLGAHADCLGQESLDHYSRASLFCDGTTS 643


>07_03_0123 -
           13688562-13689146,13689233-13689583,13689665-13689861,
           13689954-13690072,13690103-13690245,13690332-13690544,
           13690649-13690774,13690891-13691028,13691109-13691454,
           13691532-13691798,13691939-13691983,13692148-13692349,
           13692405-13692507,13692599-13692810,13692891-13693113,
           13693211-13693291
          Length = 1116

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 112 NC*PKWKRKKFKSEVITHNNRSSLF 186
           NC PKWK KK  ++  T   + S F
Sbjct: 695 NCWPKWKSKKKTTKPKTEKKKRSFF 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,570
Number of Sequences: 37544
Number of extensions: 132369
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)