Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1441
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 153 LTFKFFSLPFWST 115
           + F FF+L +WST
Sbjct: 425 IVFAFFNLAYWST 437


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 153 LTFKFFSLPFWST 115
           + F FF+L +WST
Sbjct: 425 IVFAFFNLAYWST 437


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 200 TFPVQKRLDRLLCVITSLLNFFL 132
           +FP  + L++LLC + +  N+ L
Sbjct: 98  SFPTARSLEKLLCNVEAEENYNL 120


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = -1

Query: 99  SKNGRHTNKFKSEVITHNNRSSLFCTGNVNEY 4
           + NG + N   +    +NN   +FC   +  Y
Sbjct: 250 NNNGANDNGNGNGASNNNNNGDMFCHTGLGHY 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,307
Number of Sequences: 438
Number of extensions: 1943
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)