Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1441
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   0.93 
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   0.93 
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ...    29   1.2  
At1g77570.1 68414.m09031 heat shock transcription factor family ...    27   3.7  

>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 58   NLTFKFVCMSTIFGLSLLN 114
            NLT K  C  T+FGL+LLN
Sbjct: 955  NLTVKINCEETVFGLNLLN 973


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 58   NLTFKFVCMSTIFGLSLLN 114
            NLT K  C  T+FGL+LLN
Sbjct: 955  NLTVKINCEETVFGLNLLN 973


>At1g79350.1 68414.m09247 DNA-binding protein, putative contains Pfam
            PF00628: PHD-finger domain; contains TIGRFAMS TIGR01053:
            zinc finger domain, LSD1 subclass; contains Pfam PF00271:
            Helicase conserved C-terminal domain; similar to WSSV086
            (GI:19481678)[shrimp white spot syndrome virus]; similar
            to nuclear protein Np95 (GI:17939938) [Mus musculus]
          Length = 1299

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 132  LPFWSTI*QAKSKNGRHTNK----FKSEVITHNNR 40
            LP W TI +A SK  RH++K     + E  T N R
Sbjct: 1239 LPIWGTIEKALSKQARHSHKRIRVIRIETTTDNQR 1273


>At1g77570.1 68414.m09031 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 125

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 143 NFFLFHFGQQFNKLSPKMVDIQTNLKVRLSHI 48
           +F +++ G+ + ++ PK VD+ TNL    S++
Sbjct: 30  SFIIWNVGEFYRRILPKYVDLGTNLSRFFSNL 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,376
Number of Sequences: 28952
Number of extensions: 125177
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)