Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1439
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    27   3.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.4  

>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 196 KLNNSLYYSFPDISRQEHV*WNHNSLITNVRNQGRE 303
           + N  L+YS P + +++   W +N    ++RNQ +E
Sbjct: 98  RFNGKLFYSPPRLFKEKSALWMYNFHGKSLRNQYKE 133


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 111 SICLKIFILYKYN-FVFIY 58
           S CLK+F  Y+Y+ F+F+Y
Sbjct: 202 SECLKLFFRYQYSQFLFVY 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,621
Number of Sequences: 5004
Number of extensions: 48798
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)