Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1438
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   1.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   6.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 163 ILVLLFNSILSYELS--IALNR*RF 231
           +LV++FNS LSY+ S  + + R RF
Sbjct: 168 LLVMIFNSALSYKASEIVVMLRSRF 192



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 139 IEPTEIFSDCSFQCTRCNSDSNGL 68
           ++  +IF   +F CTR N  S+ L
Sbjct: 18  LQHNQIFGFVTFTCTRSNFRSSKL 41


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 163 ILVLLFNSILSYELS--IALNR*RF 231
           +LV++FNS LSY+ S  + + R RF
Sbjct: 186 LLVMIFNSALSYKASEIVVMLRSRF 210



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 139 IEPTEIFSDCSFQCTRCNSDSNGL 68
           ++  +IF   +F CTR N  S+ L
Sbjct: 36  LQHNQIFGFVTFTCTRSNFRSSKL 59


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 317 TEFIHYTVNKTLFLYVSSNTFDLF 246
           T  I + ++ + +LY  S+T DL+
Sbjct: 24  TPLIEFNISTSNYLYTPSSTIDLY 47


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 317 TEFIHYTVNKTLFLYVSSNTFDLF 246
           T  I + ++ + +LY  S+T DL+
Sbjct: 24  TPLIEFNISTSNYLYTPSSTIDLY 47


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 292 IKLCF--YMYPQTHLTYLFFKVKSVIYLVLCSV 200
           + +CF  YMY  TH+ + F      I L++ ++
Sbjct: 60  LHVCFNSYMYAFTHIFFFFAICCDFIALIVVNI 92



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 513 FKILKYYACKLHFRVFLDHIY 575
           F ++  Y C  +F VFL  ++
Sbjct: 155 FNLVYVYCCDNNFNVFLRQVF 175


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 91  CNSDSNGLHLCRSPCSKGYKHMGQQPIRQR 2
           CN D NG       C++ ++  G  P  QR
Sbjct: 156 CNDDPNGNVPLGKSCNRYWQCQGGYPRLQR 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,671
Number of Sequences: 336
Number of extensions: 2945
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)