Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1438
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.8  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    25   6.8  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.0  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -2

Query: 362  TFRIV*LQPTLRQLMTEFIHYTV---NKTLFLYVSSNTFDLFVLQGKKRYLFSAMLSS*L 192
            +FR + LQP ++QL+ E I   V    K   LY +       +L G+  YL S+ ++   
Sbjct: 1674 SFRRIYLQPYIQQLLCEEISVFVADLEKYALLYENKRP----LLSGRIYYLISSFVA--- 1726

Query: 191  KIELNNRTRMLFLQLMIN*TN 129
             I + N+T  L   L+ N  N
Sbjct: 1727 -ISMTNKTSGLPSSLICNLQN 1746


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 292 IKLCFYMYPQTHLTYLFFKVKSVIYLVLCSV 200
           +K  F+M  + HL  + +     I +++CSV
Sbjct: 55  LKCTFFMIEEWHLLAILYDKSKYIKIIICSV 85


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 325 CLSVGCNYTILNVGIFKTKHYQC*LSINSICY 420
           C++V     +   GI +   YQC   ++S+C+
Sbjct: 501 CVAVAGGLILFFEGITEVGRYQCDTEVSSLCF 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,561
Number of Sequences: 5004
Number of extensions: 45446
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)