Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1438
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    29   4.0  
06_01_0966 - 7439901-7440034,7440529-7440610,7440634-7440927,744...    28   7.0  

>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 112 NR*IFQLVQLIINCKNNILVLLFNSILSYELSI 210
           NR +F  VQ +  CK N +  L+  IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659


>06_01_0966 -
           7439901-7440034,7440529-7440610,7440634-7440927,
           7441081-7441308,7442803-7442963,7444518-7444608
          Length = 329

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 344 LQPTLRQLMTEFIHYTVNKTLFLYVSSN 261
           L+P LR+L T +   +V   LFL ++SN
Sbjct: 231 LRPVLRRLFTTYFGESVQDVLFLRIASN 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,060
Number of Sequences: 37544
Number of extensions: 226636
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)