Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1438
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               29   3.1  
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)         29   3.1  
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 29   3.1  
SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)                  29   4.1  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   29   4.1  
SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 25  PCACIPYCTDSCKDANHYCPNCNAYI 102
           PC  + YC  +C    +YCP C  +I
Sbjct: 420 PCGHV-YCCQTCASNLYYCPLCKTFI 444


>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 28  CACIPYCT---DSCKDANHYCP 84
           C C PYCT   D C D + +CP
Sbjct: 209 CRCDPYCTSFKDCCADFDTFCP 230


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 28  CACIPYCT---DSCKDANHYCP 84
           C C PYCT   D C D + +CP
Sbjct: 142 CRCDPYCTSFKDCCADFDTFCP 163


>SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = +3

Query: 69  KPLLSELQRVHWKLQSLNISVGSI 140
           KPL S +Q++H+K++++N+++ +I
Sbjct: 530 KPLNSLVQKIHFKMENINVALDAI 553


>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
          Length = 283

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = +3

Query: 69  KPLLSELQRVHWKLQSLNISVGSI 140
           KPL S +Q++H+K++++N+++ +I
Sbjct: 101 KPLNSFVQKIHFKMENINVALDAI 124


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 19  VAPC--ACIPYCTDSCKDANHYCPNCNAYI 102
           +APC   C P C+D C     Y PN + ++
Sbjct: 705 IAPCPQVCAPACSDICCGFGAYAPNPDTHV 734


>SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 359 MLVFSKQNIISVDCQ*IQYVMKSTLFLMENNFCYIF 466
           M+V   ++++ V       V +S+LF++ NNFCY F
Sbjct: 63  MMVIVVKDLLIVSILQPVTVYRSSLFILYNNFCYKF 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,314
Number of Sequences: 59808
Number of extensions: 306882
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)