Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1438
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 53 1e-07
AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical... 48 7e-06
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 39 0.003
AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical ... 33 0.13
Z81464-6|CAB03856.2| 102|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical ... 33 0.22
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 32 0.39
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 31 0.90
AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical ... 30 1.2
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 30 1.6
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 30 1.6
AF016682-2|AAO38604.1| 891|Caenorhabditis elegans Argonaute (pl... 30 1.6
AF016682-1|AAB66187.2| 910|Caenorhabditis elegans Argonaute (pl... 30 1.6
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 29 2.7
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 29 2.7
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 29 3.6
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 4.8
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 53.2 bits (122), Expect = 1e-07
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 25 PCACIPYCTDSCKDANHYCPNCNAYIGSYNR 117
P A +P+C DSCKDA+HYCP CNA +G R
Sbjct: 125 PLAFVPFCLDSCKDAHHYCPRCNALLGIKKR 155
>AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical
protein Y87G2A.19 protein.
Length = 110
Score = 47.6 bits (108), Expect = 7e-06
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 37 IPYCTDSCKDANHYCPNCNAYIGSYNR 117
+P+C ++ KDA HYCP+C A+IG+Y R
Sbjct: 79 VPFCVETFKDAEHYCPSCRAWIGTYRR 105
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 28 CACIPYCTDSCKDANHYCPNCNAYIGSYNR 117
C +P+C SCKD H CPNC A IG + R
Sbjct: 111 CCFLPFCLRSCKDIIHTCPNCRAMIGVHRR 140
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 38.7 bits (86), Expect = 0.003
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 34 CIPYCTDSCKDANHYCPNCNAYIGSYNR 117
C+P+ D D NH CP C ++G +NR
Sbjct: 90 CVPFFLDQLLDVNHSCPACKKFLGRFNR 117
>AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical
protein Y37D8A.6 protein.
Length = 132
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 16 VVAPCACIPYCTDSCKDANHYCPNCNAYIGSYNR 117
V P C +C D KD+ H CPNC + SY R
Sbjct: 100 VFFPLLCC-FCLDGFKDSRHSCPNCGTIL-SYKR 131
>Z81464-6|CAB03856.2| 102|Caenorhabditis elegans Hypothetical
protein C08E8.1 protein.
Length = 102
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +1
Query: 34 CIPY----CTDSCKDANHYCPNCNAYIGSYNR 117
C P+ C D KD NH CP+C + NR
Sbjct: 67 CFPFLFFLCCDVSKDVNHNCPSCGMLLAKKNR 98
>AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical
protein B0348.2 protein.
Length = 86
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 34 CIPYCTDSCKDANHYCPNCNAYI 102
C C DS KD HYCP+C +
Sbjct: 57 CYWLCCDSSKDTMHYCPSCGTLL 79
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 31.9 bits (69), Expect = 0.39
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 46 CTDSCKDANHYCPNCNAYIGSYNR 117
C D KD +H CPNC + + NR
Sbjct: 75 CFDVSKDVDHNCPNCGLLLATSNR 98
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 25 PCACIPYCTDSCKDANHYCPNCNAYIGSYNR 117
PC + + D +H CPNCN +G +R
Sbjct: 57 PCFIVCFWCRCFMDVHHRCPNCNKSLGKRDR 87
>AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical
protein B0348.1 protein.
Length = 87
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 34 CIPYCTDSCKDANHYCPNCNAYIGS 108
C C S KD HYCP+C + +
Sbjct: 57 CYWLCCQSSKDTLHYCPSCGTLLAT 81
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 RTPAKMQTITVRIAT-RTLEATIAKYF 127
R PA+ QT +++ T +T+E T+AKYF
Sbjct: 429 RRPAQTQTFPLQLETGQTIECTVAKYF 455
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 RTPAKMQTITVRIAT-RTLEATIAKYF 127
R PA+ QT +++ T +T+E T+AKYF
Sbjct: 429 RRPAQTQTFPLQLETGQTIECTVAKYF 455
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 RTPAKMQTITVRIAT-RTLEATIAKYF 127
R PA+ QT +++ T +T+E T+AKYF
Sbjct: 437 RRPAQTQTFPLQLETGQTIECTVAKYF 463
>AF016682-2|AAO38604.1| 891|Caenorhabditis elegans Argonaute
(plant)-like gene protein2, isoform b protein.
Length = 891
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 RTPAKMQTITVRIAT-RTLEATIAKYF 127
R PA+ QT +++ T +T+E T+AKYF
Sbjct: 315 RRPAQTQTFPLQLETGQTIECTVAKYF 341
>AF016682-1|AAB66187.2| 910|Caenorhabditis elegans Argonaute
(plant)-like gene protein2, isoform a protein.
Length = 910
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 RTPAKMQTITVRIAT-RTLEATIAKYF 127
R PA+ QT +++ T +T+E T+AKYF
Sbjct: 334 RRPAQTQTFPLQLETGQTIECTVAKYF 360
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 25 PCACIPYCTDSCKDANHYCPNCNAYIGSYNR 117
PC+ +P S D H CP C+ +G + R
Sbjct: 987 PCSPLPCFLSSFSDFVHICPLCSHIMGRFRR 1017
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 25 PCACIPYCTDSCKDANHYCPNCNAYIGSYNR 117
PC+ +P S D H CP C+ +G + R
Sbjct: 987 PCSPLPCFLSSFSDFVHICPLCSHIMGRFRR 1017
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 46 CTDSCKDANHYCPNCNAYIGSYNR 117
C KD H+CPNC + R
Sbjct: 127 CCAGSKDVKHFCPNCGTMLACKKR 150
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 61 KDANHYCPNCNAYIGSYNR 117
KDA H+CPNC + + R
Sbjct: 105 KDAQHFCPNCGSLLAVRTR 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,866
Number of Sequences: 27780
Number of extensions: 255659
Number of successful extensions: 741
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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