Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1438
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    30   1.5  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    29   2.5  

>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 46  CTDSCKDANHYCPNCNAYIGSYNR*IFQLV--QLIINCKN 159
           C+  CK   + CP C+  IG +   I + +   ++++C N
Sbjct: 70  CSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPN 109


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 46  CTDSCKDANHYCPNCNAYIGSYNR*IFQLV--QLIINC 153
           C+  C + ++ CP C+  IG+Y   I + V    I+ C
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYRSRIMERVVEAFIVRC 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,997
Number of Sequences: 28952
Number of extensions: 208721
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)