Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1437
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    29   3.8  
At1g18220.1 68414.m02270 hypothetical protein                          28   5.0  
At4g37920.1 68417.m05362 expressed protein                             28   6.6  

>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +1

Query: 391 LVTIYFYNL-NVSHSYPQFIYKI 456
           LV IYF NL N++ S+PQF++++
Sbjct: 103 LVGIYFTNLRNITGSFPQFLFQL 125


>At1g18220.1 68414.m02270 hypothetical protein
          Length = 45

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 119 HFYNNVARKLTLLIVEII-RLITNKK*PTFHI 211
           H  + + R L L +++I+ +++TNKK PT HI
Sbjct: 12  HVLHQMLRILELEVIQIMPKVMTNKKKPTLHI 43


>At4g37920.1 68417.m05362 expressed protein 
          Length = 673

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 223 ILYWPPQNSTTHQLPTIAF 279
           +L +PP+NS TH LP  AF
Sbjct: 263 LLSFPPKNSQTHHLPFSAF 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,403
Number of Sequences: 28952
Number of extensions: 216165
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)