Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1432
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 32 0.088
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.62
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 28 1.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 3.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.4
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.8
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 5.8
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 7.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.6
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 7.6
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 31.9 bits (69), Expect = 0.088
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 434 SGCGRCRVWSMFVRYVRFSELVF*YMRPQKLYIF 535
+GCG+ VW +VR+V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.62
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 617 ARKIRGRPENAGPDPVRNVRRFSRV 543
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 646 ARNETDTTLRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPHILKY*LAKTNITH 470
A E +R G+S + R+ ++ D F +KY +F+RP L+ K N+TH
Sbjct: 128 AEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTH 185
Query: 469 E 467
+
Sbjct: 186 K 186
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 460 VDVRALCSF*RVSILIYAASKTVYI*YDTRENRLT 564
+DVR L SF + LIY K Y+ T N LT
Sbjct: 330 LDVRRLISFGTIKGLIYRVHKYPYLERRTMRNNLT 364
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 274 STYIPHLIFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 143
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 213 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 76
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 161 PWNPIEGRYGSEREEHRICGGVRILSADLEN*VRDVRGDVAP 286
P+ P+EG Y + ++ HRI R A LE +R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 471 TNIDQTRHRPHPLPVQTRHAPV 406
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 359 FPYLHYSID*RLFTLETCCGYGYEPARHL 273
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 260 SPNFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 99
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,958
Number of Sequences: 5004
Number of extensions: 63058
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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