Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1431
         (595 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YUG5 Cluster: Putative uncharacterized protein; n=3; ...    34   2.9  
UniRef50_Q24DL8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q7R8F1 Cluster: GAF domain protein; n=3; Plasmodium (Vi...    33   6.7  

>UniRef50_Q4YUG5 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 761

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 330 TVFFLKHLFEILIFFKLPNIQRNPKLSIHVNELFKLVNMLFCYNIK*IENNVTLFGFSVF 509
           TV FL +LF++     L  I+R+ K++IH  +LF     +F Y IK +++N   F  ++ 
Sbjct: 390 TVIFL-NLFKLHNIMSLNIIRRSGKVTIHSEKLFTFDMDMFTY-IKYVDDNFQNFNSNLM 447

Query: 510 YCIKDMFFMRLRAHVDY 560
             I   F    +  +DY
Sbjct: 448 DKIIQSFIKNYQFFLDY 464


>UniRef50_Q24DL8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 854

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 345 KHLFEILIFFKLPNIQRNPKLSIHVNELF 431
           K +++I + F + N+  NPK+ +H+N+L+
Sbjct: 234 KRMYQIALNFLIENVHENPKMILHLNQLY 262


>UniRef50_Q7R8F1 Cluster: GAF domain protein; n=3; Plasmodium
           (Vinckeia)|Rep: GAF domain protein - Plasmodium yoelii
           yoelii
          Length = 703

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +3

Query: 309 SFKKSRYTVFFLKHLFEILIFFKLPNIQRNPKLSIHVNELFKLVNMLFCYNIK 467
           +F K +YT++ +K   +I+     PN     K  +H+N +FKL ++  CYN K
Sbjct: 98  TFIKKKYTLYLIKRRKKII-----PN--NCFKCEVHINNIFKLNSLPTCYNSK 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,364,237
Number of Sequences: 1657284
Number of extensions: 9077717
Number of successful extensions: 15533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15527
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)