Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1431
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115...    27   8.5  

>05_01_0167 -
           1153778-1153927,1154006-1154797,1155602-1156408,
           1156514-1156618,1156985-1157059,1157160-1157233,
           1157388-1157450,1157549-1157647,1157704-1157811,
           1157908-1157973,1158073-1158150,1158257-1158304,
           1158381-1158440,1158527-1158610,1158902-1158949,
           1159049-1159096,1161462-1161579
          Length = 940

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 569 QYDIIDMRS*SHKKHIFYTIKDTKTKQCYVIFNLFNVITK 450
           ++D+ + R    +K +   +++ K  +CY +F   NVI+K
Sbjct: 619 EFDLDENRKAQLRKTLELQVEEIKKFKCYAVFEAENVISK 658


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,667,740
Number of Sequences: 37544
Number of extensions: 213965
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)