Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1431
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical ...    32   0.35 
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical
           protein B0545.4 protein.
          Length = 255

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +3

Query: 225 RVCRISK*TILVSQQGLKV*RLNQSAG*SFKKSRYTVFFLKHLFEILIFFKLPNIQRNPK 404
           R+ + ++  ++      +V RL  +AG    K R T+      F++L+         NP 
Sbjct: 169 RLSQFARRFVICPTGSSEVERLFSTAGTILTKYRKTL--TSENFKMLLTLNKNIRLMNPD 226

Query: 405 LSIHVNELFKLVNMLFCYNIK*IEN 479
           + + +  + K +N LFCY +   EN
Sbjct: 227 MEVKLPSMIKSINSLFCYKLSFFEN 251


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 309 SFKKSRYTVFF---LKHLFEILIFFKLPNIQRNPKLSIHVNELFKLVNMLFCYNIK*IEN 479
           +FK   Y +      ++L + L F  +  I      ++ +N++ + +   +    K    
Sbjct: 222 NFKNDHYNLVLAPSFENLPDFLNFKSIDRILYRTSKNMSINQIDEFLTQTWKLMNKCTSG 281

Query: 480 NVTLFGFSVFYCIKDMF 530
            + LF F ++ C+KDMF
Sbjct: 282 CIFLFIFPIYKCLKDMF 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,254,937
Number of Sequences: 27780
Number of extensions: 235500
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)