Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1427
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.35 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.6  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 581 SRGSFKRRRAFPPRHHSARLERNTGARRYYRPRTASAQPSK 459
           SRG   + R+   R      E  T    YYRPRT+  +P +
Sbjct: 206 SRGRHNQSRS--KRQPKTGREDQTRRNPYYRPRTSRTEPPR 244


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 422 SSLKNHYFHCFITYSVGRK 478
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 542 RHHSARLERNTGARRYYRPRTA 477
           R H   +ER  GA    R RTA
Sbjct: 70  RSHEPEMERPKGASNGKRARTA 91


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 542 RHHSARLERNTGARRYYRPRTA 477
           R H   +ER  GA    R RTA
Sbjct: 90  RSHEPEMERPKGASNGKRARTA 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,522
Number of Sequences: 336
Number of extensions: 2670
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)