Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1427
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   6.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   8.1  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 217 GYLKRVIVTPAVYPRLLEFLHVDIQST 137
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 211  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 119
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -2

Query: 562  GDERFRHVTTLHAWNETPAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 404
            G   FR+V  +H         D   R    PNR+ N  +  + F + ++ T++
Sbjct: 1382 GKPNFRYVQYIHRTGTVLVQIDDDQRFLWLPNRLHNSKVSKLSFTKSNKSTLN 1434


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 539 HHSARLERNTGARRYYRPRTASAQPSK**NNESSGFSATIARNDLPLM 396
           H   R  +    RR Y P+  +A+P     N++ G   +   +DLP++
Sbjct: 106 HRPERRRKTNNDRRNYPPQNRTAKP-----NDNDGDDYSFFEDDLPVI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,902
Number of Sequences: 5004
Number of extensions: 46296
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)