Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1427
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0006 + 16257288-16259522 30 1.5
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.7
03_01_0037 - 335646-335855,336480-336686,336962-337129,337377-33... 29 3.6
12_02_0077 - 13288916-13289659,13289689-13289691 28 6.2
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 6.2
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 6.2
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 6.2
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 28 6.2
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 28 6.2
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 417 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 265
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 235 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 134
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 417 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 292
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>03_01_0037 -
335646-335855,336480-336686,336962-337129,337377-337973
Length = 393
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 436 PLLSLFHYLLGWAEAVRGR*YR-RAPVFRSKRAEW*RGGNARRRLK 570
PLLSL + WA+AV R R R P++ A+W ++RR L+
Sbjct: 42 PLLSLLSAVPDWADAVSERRIRDRRPLY--THADWREHRSSRRHLR 85
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 360 ESSSTGSSFPADSPKPVPLAVVSLDSR 280
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 16 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 144
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 144
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 390 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 283
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 511 PAPADIIDRAPLPPNRV 461
P P ++++APLPP R+
Sbjct: 90 PMPVPVVEKAPLPPKRI 106
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -2
Query: 274 TVGISLIIHARH*LDDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 95
T G+ ++ H + F + ++ V + RL++F+ VD+ + V+ R+G R
Sbjct: 10 TCGLRIMPDMEHQSEGRFFAWHIQIEVDHMLSERLMQFIDVDLHGVKAREKFVSVRKGTR 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,019
Number of Sequences: 37544
Number of extensions: 351444
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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