Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1427
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 1e-10
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 1e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 2.8
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 4.8
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 28 4.8
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.4
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 6.4
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 6.4
SB_53612| Best HMM Match : SRCR (HMM E-Value=0) 28 6.4
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 6.4
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.4
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_22673| Best HMM Match : FixQ (HMM E-Value=7.6) 28 6.4
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 6.4
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51) 28 6.4
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 6.4
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 6.4
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 73.3 bits (172), Expect = 1e-13
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -3
Query: 408 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 280
+PTY+TPLMS + RLESSSTGSSFPAD KPVPLAVVSLDSR
Sbjct: 88 TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 478 LPPNRVSNETMKVVVFQRR 422
LP +R+S +T++VVVF RR
Sbjct: 67 LPLHRISKKTIRVVVFHRR 85
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 1e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 149 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 45
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 137 SALNVNVKKFKQARVNGGSNYDSL 208
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +2
Query: 140 ALNVNVKKFKQARVNGGSNYDSL 208
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +2
Query: 134 PSALNVNVKKFKQARVNGGSNYDSLKVAKCLVI*LVTRMND 256
PSALNV VKKF QARVNGG +S L + +V + D
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLESTCRHASLALAVVLQRRD 71
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 220 MPRHLISDAHE*LTRFP 270
MPRHLISDAHE + P
Sbjct: 1 MPRHLISDAHEWINEIP 17
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 64 ESDCLIKTKHCDGPRGC*RNVISAQCSE 147
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 411 RSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 292
R PT P + Y +S TG +F AD P+ VP+ VS
Sbjct: 117 RRPTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVS 156
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 520 NETP--APADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 407
N+ P PA + +++PLP N ++E +++ QRR E +
Sbjct: 2402 NQAPDDLPAKLPNQSPLPNNASASEIQRILENQRREEELL 2441
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 523 WNETPAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 404
W++T D ++ P P N S + +KV+V +R R + S
Sbjct: 622 WDKTRTKQDDYNKTPSPENDPSQDNIKVLVTRRPRRPSDS 661
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_53612| Best HMM Match : SRCR (HMM E-Value=0)
Length = 409
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 417 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 307
A + T ATP SP R +++ SS SP P P
Sbjct: 366 ASSASTPATPDSSPKRKRTRQANSASSSQPSSPHPAP 402
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_22673| Best HMM Match : FixQ (HMM E-Value=7.6)
Length = 184
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 548 PPRHHSARLERNTGARRYYRP 486
P RH AR++RNT A+R P
Sbjct: 37 PTRHDEARIKRNTRAKRILTP 57
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
Length = 976
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -2
Query: 571 VLNGDERFRHVTTLHAWNETPAPADIIDRAPLPPNRVSNETMKVVVFQRRSRE 413
+ GD TT A APA I PPNR + +T K V ++ SR+
Sbjct: 339 ITEGDSGALGATTASAPGAPVAPASAIAAVIPPPNRRAQDTGKRVPSRKDSRK 391
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 397 ISGRSFRAIVAEKPLLSLFH 456
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,754,787
Number of Sequences: 59808
Number of extensions: 383581
Number of successful extensions: 979
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -