Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1427
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 2.3
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 3.0
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 3.0
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 5.2
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 6.9
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 6.9
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 6.9
At5g04440.1 68418.m00441 expressed protein 27 9.1
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 27 9.1
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 27 9.1
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 396 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 286
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 199 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 89
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 199 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 89
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 490 DRAPLPPNRVSNETMKVVVFQRRSRET 410
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 481 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 371
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 481 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 371
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 408 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 301
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At5g04440.1 68418.m00441 expressed protein
Length = 255
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -2
Query: 541 VTTLHAWNETPAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 404
+T+ +++E+P P+ + + P RVS+ + F R ++++S
Sbjct: 33 ITSSSSFDESPKPSSLATSSSTSPIRVSSSSTPKARFIARQKQSVS 78
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 222 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 124
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 222 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 124
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,775
Number of Sequences: 28952
Number of extensions: 257637
Number of successful extensions: 660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -