Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1426
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    29   0.34 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    27   1.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.8  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.2  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   5.6  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   5.6  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.3  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.7  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/64 (23%), Positives = 35/64 (54%)
 Frame = -3

Query: 385 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDLLVASRIQNARRDVEA 206
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+  ++ ++  +++R  V  
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 205 HLDR 194
            + R
Sbjct: 149 WVHR 152


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +1

Query: 112 PRHRTELYPDLRSRDARVKK-----KTDSI-DLRDPNGLRRRVSRFECETRLVNHIV 264
           P  R  L P+ R    RV       +T +I  ++DP  L  R  + EC T++VN+++
Sbjct: 62  PTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRPLSDRRYQQECATQVVNYLL 118


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 319 AESGKDMLTVEPRESGGSKQCDLLVASRIQNARRDVE 209
           A SGK  LT E   SG   Q DLL  S +  ++  VE
Sbjct: 367 APSGKPSLTAEEWASGKDAQPDLLDMSTLYESKGTVE 403


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 49  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 228
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 457 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 308
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 98  VDDFRSWRGVVLGRAASCCDLLRLS 24
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 457 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 335
           C    A  +  +S G +VHA  RAA    +  A  CL   K
Sbjct: 54  CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 406 PNVRNCGSSRTEQYYYRNDKPSVG 477
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 28  SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 189
           +++  + D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,190
Number of Sequences: 5004
Number of extensions: 46421
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)