Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1426
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.20
10_08_0774 + 20478203-20479393 30 1.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.8
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.2
01_06_0695 - 31292622-31293317 28 4.3
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 5.6
03_05_1088 + 30301654-30303480 28 5.6
07_03_0626 + 20060013-20060273,20061017-20061274 27 7.5
10_08_0113 - 14896341-14897153 27 9.9
08_02_1485 - 27466761-27467753 27 9.9
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 27 9.9
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 27 9.9
01_06_0723 + 31501900-31502808,31502846-31503295 27 9.9
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 9.9
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 61 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 189
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>10_08_0774 + 20478203-20479393
Length = 396
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 240 DATSKSHCLEPPDSRGSTVSISLPDSARLASA 335
+AT+ S+CL PPD+ G + ++ L SA+LA A
Sbjct: 192 NATAFSYCLAPPDT-GKSSALFLGASAKLAGA 222
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 415 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 317
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 475 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 311
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 310 GKDMLTVEPRESGGSK 263
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 13 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 147
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 7 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 186
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 187 D 189
+
Sbjct: 791 E 791
>03_05_1088 + 30301654-30303480
Length = 608
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 391 RAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDLLVASRIQ-NARRD 215
R+ G+ L ++ C N AE + K++L +EP E GG + A+ Q N +
Sbjct: 532 RSIWGSILSASSACQNTEVAEIA----SKELLCLEPAEEGGYVLLSNMYAAEGQWNYSNE 587
Query: 214 VEAHLDR 194
V +++R
Sbjct: 588 VRENMER 594
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 316 RLGWLRP*RRSGIIP 360
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -1
Query: 129 LSSMSGLGIVCRRL----PFLAGCCAR 61
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 270 PPDSRGSTVSISLPDSARLASALEAFRHNPA 362
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 309 ARICSLWSPESREALNNVIY*SRLAFKTRDATSKPIWIAE 190
A +C+ WSP R ++ V+ + D +KP +I E
Sbjct: 878 ALLCTQWSPHQRAPMSRVVSMLAGDVEVPDVLTKPSYITE 917
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 27.1 bits (57), Expect = 9.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -3
Query: 400 ALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ--CDLLVASRIQN 227
ALG A P G CLN K+EASLA ++ + R G ++ C LL A
Sbjct: 206 ALGLMPSSAASPQLG-CLNVLKSEASLA----SLVALLERGRGRTRAGLCRLLEAVATAA 260
Query: 226 ARRDVEAHLDRGDRCYRFFS*HVHHGSEGP 137
A R++ + R ++ + H P
Sbjct: 261 ATRELALVVAASPRVWQALLPLLRHDGPAP 290
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 13 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 114
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 64 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR 216
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,279
Number of Sequences: 37544
Number of extensions: 365154
Number of successful extensions: 1071
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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