Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1426
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 28 4.4
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 28 4.4
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2) 28 5.8
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 5.8
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_55389| Best HMM Match : Las1 (HMM E-Value=0.074) 28 5.8
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 28 5.8
SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 27 7.6
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 178 DSIDLRDPNGLRRRVSRFECETRLVN 255
DS ++DP G+RR++ F E R VN
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVN 126
>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +1
Query: 37 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRR 216
R QH A ST Q ++ + L P L R +K K S L++ L
Sbjct: 514 RCQHKFATSSTAWYQVVDTACQHKWRNLEEVLVPSLPERQRNLKNKLRSKLLKN---LHV 570
Query: 217 RVSRFECETRLVNHIV*SLPTLG 285
R+ R+ E+R NH + L TLG
Sbjct: 571 RLRRWRRESRAPNHPLAGLNTLG 593
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 64 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 201
STT E +SSTD EP + + + +RD R ++ D RDP
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTR--DTVNNRDTRDP 238
>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 37 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 192
RS D ST R S+ S+P+ EL+ R++ A ++ TD + L
Sbjct: 218 RSYQDLHRQSTPQHGRRGSTQQSSQPKFVNELFYKQRAKSAHSQRPTDKLHL 269
>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 22 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 171
G S+ RS D A+ T PR ++ P P++ SRD +K
Sbjct: 300 GPSIARSHSDWAITRTKPRNRERAPESSQAPNDEAGKNPEVVSRDTMAQK 349
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 277 SGGSKQCDLLVASRIQNARRDVEAHLDRGDRCY 179
S G+K C+ + S + RDV H+D+ +CY
Sbjct: 50 SQGAKLCEEIKDSFEELEERDVSVHIDKFSKCY 82
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 64 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 174
S QER++ D + PRH EL PD+R D RV ++
Sbjct: 1453 SRVESQERQTMRD-TRPRHPDELRPDIR-HDIRVAQE 1487
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 443 CSVREEPQFRTFGSCTRPSG 384
CS R P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 29 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 118
+ T ST +R HP + S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 4.4
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 28 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHR----TELYPDLRSRDARVKKKTDSIDLR 195
S +R + D+ PS PR+ RKS + S PR R + P +RS ++ +
Sbjct: 904 SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPP 962
Query: 196 DPNGLRRRVSRFECETR 246
P RR+V+ E + R
Sbjct: 963 SPRRARRKVASPEEQDR 979
>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 61 PSTTPRQERKSSTDYSE-PRHRTELYPD 141
P+T PR +R+S T S+ RH + L PD
Sbjct: 8 PNTIPRSDRRSRTGISQRHRHTSSLTPD 35
>SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)
Length = 277
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 139 DLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVNH 258
++RS R+ K+ ++ LRD +RR+ + C+ + NH
Sbjct: 131 NIRSLGYRISKEPNNHSLRDTLNRKRRIFKKMCKRKKENH 170
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 40 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 201
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P
Sbjct: 434 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 486
>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 40 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 201
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P
Sbjct: 89 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 141
>SB_55389| Best HMM Match : Las1 (HMM E-Value=0.074)
Length = 444
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 70 TPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRL 249
T + E + S + +E + +RS R+ K+ ++ LRD +RR+ + C+ +
Sbjct: 307 TLQDEVQPGVPQSRGKRASETWK-IRSLGYRISKEPNNHSLRDTLNRKRRIFKKMCKRKK 365
Query: 250 VNH 258
NH
Sbjct: 366 ENH 368
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 27.9 bits (59), Expect = 5.8
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = +1
Query: 16 GAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLR 195
G + R QH+ A STT Q ++ + + L P L R + K + L
Sbjct: 1078 GTASADTRCQHEFATSSTTWYQVVDTACQHKWRNLKEVLVPSLPERQRNLTNKLRNKLL- 1136
Query: 196 DPNGLRRRVSRFECETRLVNHIV*SLPTLG--APQ*AYPCRIRL 321
N L R+ R+ E+R NH L LG P+ ++ C L
Sbjct: 1137 -VNLLHVRLRRWRRESRAPNHPRPDLNILGELKPEGSWQCGTEL 1179
>SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 296 HCGAPRVGRL*TM*FT-SRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVR 120
H P+V R+ F+ R + S RE +RR R+ L VF + S RSGY R
Sbjct: 26 HNEGPQVFRVRDFAFSCDRDTESSREHKRRDSGEMLRTNLKVFRVAGPSVFLRSGYEFSR 85
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 40 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD 198
S HD S +P ++ + + SEPR + + +P R+ + + D+ D D
Sbjct: 475 SNHDRVNNSQSPSEQPLNQANGSEPRKQKKQFPMERTTNIQPNGSGDNHDRED 527
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,331,643
Number of Sequences: 59808
Number of extensions: 392911
Number of successful extensions: 1799
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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