Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1426
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    29   2.9  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    29   2.9  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    29   2.9  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       29   2.9  
U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    27   6.7  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    27   8.9  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    27   8.9  

>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 66  HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*MRD 242
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+    
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223

Query: 243 -ATSKSHCL 266
            A ++SH L
Sbjct: 224 PALAESHSL 232


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 66  HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*MRD 242
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+    
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223

Query: 243 -ATSKSHCL 266
            A ++SH L
Sbjct: 224 PALAESHSL 232


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 66  HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*MRD 242
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+    
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223

Query: 243 -ATSKSHCL 266
            A ++SH L
Sbjct: 224 PALAESHSL 232


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 66  HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*MRD 242
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+    
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223

Query: 243 -ATSKSHCL 266
            A ++SH L
Sbjct: 224 PALAESHSL 232


>U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical
           protein F18E3.11 protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 64  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 225
           STT    RKSST    PRH   +     +   ++ +   S  L D N L+R+ S
Sbjct: 30  STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 206 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWR 75
           P   R+ +LS FF ++ SR+RRS  +    R       D  SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 131 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 238
           YIRT     +VLRKKP  S+       D   +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 306 LPDSARLASALEAFRHNPADGSFXXXXXXXXXXTKCPKLRFLS 434
           LPD + ++S+L    HNP   ++          TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,564
Number of Sequences: 27780
Number of extensions: 279258
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)