Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1426
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.51 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 28  SLNRSQHDAALPSTTPRQERKSST 99
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 400 ALGRAAGGAKLPSAGLCLNASKAEASL 320
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 400 ALGRAAGGAKLPSAGLCLNASKAEASL 320
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 400 ALGRAAGGAKLPSAGLCLNASKAEASL 320
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 400 ALGRAAGGAKLPSAGLCLNASKAEASL 320
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 374 RTTGRSAECMNQMSETAVPLVLSS 445
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 30  SQQIAARRCSTEHNTPPGT 86
           S Q + +R STE   P GT
Sbjct: 534 SGQTSVQRASTEFGIPTGT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,719
Number of Sequences: 438
Number of extensions: 3359
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)