Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1426
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   0.89 
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    28   4.7  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   4.7  
At4g35390.1 68417.m05027 DNA-binding protein-related contains Pf...    27   6.2  
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy...    27   6.2  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   6.2  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At5g03560.1 68418.m00314 expressed protein                             27   8.3  

>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 502 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 326
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 325 SLAESGKD 302
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 282 ESREALNNVIY*SRLAFKTRDATSKPIWIAEID 184
           ES  +  N+ Y  R A  T  AT  PIW+ EID
Sbjct: 386 ESHFSTPNIPY-MRSALDTLGATGLPIWLTEID 417


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 406 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSKPAHVP 522
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At4g35390.1 68417.m05027 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 299

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 25  LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD-P 201
           + LNRS+ D A   TTP     SS   S         P  R   ++ K K  +I  RD P
Sbjct: 30  MELNRSEADEAKAETTPTGGATSSATASGSSSGRR--PRGRPAGSKNKPKPPTIITRDSP 87

Query: 202 NGLRRRV 222
           N LR  V
Sbjct: 88  NVLRSHV 94


>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 576

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 282 ESREALNNVIY*SRLAFKTRDATSKPIWIAEID 184
           ES  +  N+ Y  R A  T  AT  PIW+ EID
Sbjct: 417 ESHFSTPNIPY-MRSALDTFGATGLPIWLTEID 448


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 88  KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRL 249
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRI 192


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -3

Query: 445 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 299
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At5g03560.1 68418.m00314 expressed protein
          Length = 241

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = +1

Query: 58  LPSTTPRQERKSSTDYS---EPRHRTELYPDLRSRDARVKKKTDSIDL 192
           L +++ R+E+K++  +S   +  H  +L P+LR R   V+ +TD I++
Sbjct: 64  LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINV 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,487
Number of Sequences: 28952
Number of extensions: 265270
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)